PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g063270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BBR-BPC
Protein Properties Length: 343aa    MW: 38208.2 Da    PI: 9.7488
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g063270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind4081.1e-12413421301
       GAGA_bind   1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd g+re  r+k+       ++ +s+     +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+al+++e
  Csa20g063270.1   1 MDDGGHREngRHKAAQGqwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYRE 90 
                     999999887888873331222222344.....5************************************************************** PP

       GAGA_bind  89 nsla.......salpvgvqvlsgtksidslqqlse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
                     ns++       sa p+g+q+++g+k++++ +++++      pql+d+a+e+re+e ++ lp++  a +a e++k+k+++r k+pk++++++++k+
  Csa20g063270.1  91 NSMVtaaganmSAGPPGCQMSRGVKHMHHPHMHHHhqqhhiPQLTDNAYETREMEPNDGLPTSPPAGSALESAKPKRGKRVKDPKATTQTAANKR 185
                     **999999999999****************9976679999******************************************************* PP

       GAGA_bind 171 sekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiS 240
                     ++k+++kvkkes+d+                         sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S
  Csa20g063270.1 186 GPKNQRKVKKESEDDLtkimfvktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLS 280
                     ************984358********************************88******************************************* PP

       GAGA_bind 241 vyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                     +yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  Csa20g063270.1 281 MYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 342
                     ************************************88***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.2E-1031342IPR010409GAGA-binding transcriptional activator
SMARTSM012266.7E-1811342IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDDGGHRENG RHKAAQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE KKAAIAERDM  60
AFLQRDTAIA ERNNAIMERD SALTALQYRE NSMVTAAGAN MSAGPPGCQM SRGVKHMHHP  120
HMHHHHQQHH IPQLTDNAYE TREMEPNDGL PTSPPAGSAL ESAKPKRGKR VKDPKATTQT  180
AANKRGPKNQ RKVKKESEDD LTKIMFVKTT HDYTEEDSSK HILIGSKSDW KSQEMVGLNQ  240
VVYDETTMPP PVCSCTGVLR QCYKWGNGGW QSSCCTTTLS MYPLPALPNK RHARVGGRKM  300
SGSAFNKLLS RLAAEGHHDL SNPVDLKDHW AKHGTNRYIT IK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2217520.0AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10.
GenBankAK2272460.0AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04.
GenBankAY0885640.0AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBankAY3805720.0AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
GenBankBT0248740.0BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds.
GenBankEF1231080.0EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494188.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLR0GAL80.0R0GAL8_9BRAS; Uncharacterized protein
STRINGAT5G42520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6